Windows

bpc_ReadAbf IGOR.5.00.x-0.12

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Download: bpc_ReadAbf_012.zip
Size: 227.01 KB
md5_file hash: 959671018741357aa3c5fb714d3a7a46
First released: June 12, 2017 - 00:48

added the two functions 'bpc_AbfReadTimeTags' & 'bpc_AbfReadExternalTags' to read 'time tags' and 'external tags' respectively
from pClamp data files, they should be used like:

Make/D/O tag_wave=0
ret=bpc_AbfReadTimeTags("C:\\...\\data_file.abf",tag_wave)

bpc_AbfReadTimeTags returns 0 on error and 1 on success. (finding no tags in 'data_file.abf' is NOT an error condition)

on return, the length of the wave supplied as function parameter ('tag_wave' in the example above) indicates the number of tags read
the content of 'tag_wave' represents the timing values

tNeuroshare IGOR.6.30.x-1.0

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Download: tNeuroshare-1.0.0.zip
Size: 111.58 KB
md5_file hash: c280eb22ae5ec8a94a16206549e9e09f
First released: June 10, 2017 - 09:47

The first release on 2017/06/10.

tNeuroshare

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tNeuroshare

Igor Pro GUI for importing any neurophysiology data in neuroshare format.

Getting Started

Prerequisites

* Neuroshare.XOP (http://www.nips.ac.jp/huinfo/documents/neuroshare/index.html)
* Neuroshare-compliant DLL (http://neuroshare.sourceforge.net/DLLLinks.shtml)
* tUtility (https://github.com/yuichi-takeuchi/tUtility)
* SetWindowExt.XOP (http://fermi.uchicago.edu/freeware/LoomisWood/SetWindowExt.shtml)

This code has been tested in Igor Pro version 6.3.7.2. for Windows and supposed to work in Igor Pro 6.1 or later.

Installing

tSort IGOR.6.30.x-1.0

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Download: tSort-1.0.0.zip
Size: 1.77 MB
md5_file hash: 22995144d531c0fe7cd291b1c85a9ca9
First released: June 10, 2017 - 06:04

The first release on 2017/06/10.

tSort

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tSort

An Igor Pro GUI which offers a spike sorting environment for extracellular recordings with microelectrodes.

Getting Started

Prerequisites

* tUtility (https://github.com/yuichi-takeuchi/tUtility)
* SetWindowExt.XOP (http://fermi.uchicago.edu/freeware/LoomisWood/SetWindowExt.shtml)

This code has been tested in Igor Pro version 6.3.7.2. for Windows and supposed to work in Igor Pro 6.1 or later.

Installing

1. Install Igor Pro 6.1 or later.

miniAna IGOR.6.30.x-1.0

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Download: MiniAna_v1.0.0.zip
Size: 337.87 KB
md5_file hash: efb981051bda1c7bae31f7e6538ac384
First released: June 7, 2017 - 13:11
Last updated: June 7, 2017 - 13:11

The first release on 2017/06/07.

miniAna

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miniAna

An Igor Pro procedure with offers an analytical environment for miniature events, written to analyze miniature EPSCs recorded in in vitro brain slice preparation of mice. Several parameters are obtained on each event (timestamps, amplitude, decay time, interevent interval etc) and the parameters can be exported as a comma-separated value file. Averaged trace of recorded events can also be prepared as a graph.

Getting Started

Prerequisites

* tUtility (https://github.com/yuichi-takeuchi/tUtility)

tUtility IGOR.6.30.x-1.0

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Download: tUtility_v1.0.0.zip
Size: 2.37 MB
md5_file hash: 1db399941f6332bf12eabc08d07b13e8
First released: June 6, 2017 - 11:42

The first release on 2017/06/06.

tUtility

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tUtility

This procedure (tUtility) offers a GUI (control panel) for general purpose analyses with necessory library.
It is written for analyses and figure preparation of in vitro patch-clamp data.
But it can be utilized for other analyses including in vivo intra- and extracellular recordings, calcium imagings etc.

Getting Started

Prerequisites

* PPT.XOP (http://www.mpibpc.mpg.de/groups/neher/index.php?page=software)
* SetWindowExt.XOP (http://fermi.uchicago.edu/freeware/LoomisWood/SetWindowExt.shtml)

Quick ROI inspector IGOR.6.20.x-1.0

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Download: QuickRoi.ipf
Size: 3.89 KB
md5_file hash: 50aac9740b1d7afa0c9da58b3937d332
First released: June 6, 2017 - 07:40

////////////////////QUICK ROI TOOL////////////////////////////////
////Use the marquee tool to mark an ROI, right click and select quickroi.
////This is then appended to the image with its coordinates printed to the history.
////The average of the pixel values within the ROI in each frame is calculated and
//// shown in the wave QROI. If you select a new ROI this everything is updated.
/// You can also use the "subtract background" button to subtract the average of the
////ROI pixels from the whole image on a frame by frmae basis. Useful for analysing Ca imaging movies

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