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Encircle IGOR.7.00.x-1.02

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Download: Encircle_0.ipf
Size: 9.43 KB
md5_file hash: d93c4f1a89cb1c9c2053665e018a3479
First released: September 19, 2017 - 17:24

Version 1.02 works with data that are plotted with offsets.

Baseline Fitting IGOR.7.00.x-3.01

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Download: Baselines_1.ipf
Size: 30.23 KB
md5_file hash: 5e10a4585f3c174bfb0e920c2c1e670c
First released: September 14, 2017 - 13:58
Last updated: September 14, 2017 - 13:58

Uses a new control panel interface. Baseline is updated in response to controls. Added some extra fitting functions. New option to attempt to fit a tangent between two curved regions of spectrum.

Arc Hull Baseline IGOR.7.00.x-2.0

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Download: ArcHull_1.ipf
Size: 22.91 KB
md5_file hash: 08d700f2707793514d8987384f93df09
First released: September 14, 2017 - 10:00
Last updated: September 14, 2017 - 10:00

Introduces iterative fitting of CurveFit functions with elimination of either positive or negative residual points

Baseline Fitting IGOR.7.00.x-3.0

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Downloaded 34 times
Download: Baselines_0.ipf
Size: 29.75 KB
md5_file hash: 8847d52e13a34a541ae40851c94389d7
First released: September 14, 2017 - 09:28

Uses a new control panel interface. Baseline is updated in response to controls. Added some extra fitting functions. New option to attempt to fit a tangent between two curved regions of spectrum.

Encircle IGOR.7.00.x-1.0

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Downloaded 44 times
Download: Encircle.ipf
Size: 9.34 KB
md5_file hash: bf386fb89d698dda381f138fdf211474
First released: August 28, 2017 - 15:25
Last updated: August 28, 2017 - 15:25

First release, feedback appreciated!

Encircle

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encircle.png

Encircle a cloud of data on a plot and shade the bounded region.

How to use:

  • Right click on a data point to invoke the trace menu and select "Encircle points" to draw a polygon that surrounds all of the data in the wave.
  • If you change the aspect ratio of the plot area you can repeat this procedure to update the shape of the polygon that surrounds the data.
  • Selecting "Remove Encircled Region" deletes the shaded region.

Polygons are drawn in the user back layer using axis coordinates and can be edited with the drawing tools.

Semi-Automated Routines for Functional Image Analysis (SARFIA) IGOR.7.00.x-1.09-A

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Download: SARFIA_1_09_0.zip
Size: 6.04 MB
md5_file hash: dda2cc4007fbd5b49b1a005ab2e9f43f
First released: August 21, 2017 - 06:02
Last updated: August 21, 2017 - 06:01

Requires Igor Pro 7 or later.
For Igor 6.3 compatibility download SARFIA version 1.07.

This release contains a detailed help file, describing all functions and a manual describing the control panels. To install, unzip and copy the contents of User Procedures into the WaveMetrics>User Procedures folder, the contents of Igor Procedures into the WaveMetrics>Igor Procedures folder and the contents of Help Files into the WaveMetrics>Igor Help Files.

Changelog:
1.09: Multithreaded "RemoveROI" to speed up removal of small (or large) ROIs; Minor improvements.

Semi-Automated Routines for Functional Image Analysis (SARFIA) IGOR.7.00.x-1.09

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Download: SARFIA_1_09.zip
Size: 116.88 KB
md5_file hash: c617330e83e25fa2882d6d6c0093aff6
First released: August 21, 2017 - 05:54

***The zip file doesn't contain all necessary files. Download release 1.09A***

Gene set enrichment analysis report handling for graphing in Cytoscape IGOR.7.00.x-1.0

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Download: GSEA2Cytoscape.zip
Size: 13.26 KB
md5_file hash: e2b0cb748814932cd7f5530c3c1e2618
First released: July 18, 2017 - 07:06

The .zip file contains an Igor procedur file (.ipf) and a word processor file (.rtf) showing an example run.

Gene set enrichment analysis report handling for graphing in Cytoscape

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This project handles gene set enrichment analysis (GSEA) output from the Broad Institute resource (http://software.broadinstitute.org/gsea/index.jsp) comparing enrichments between two groups and providing output to be graphed in Cytoscape (http://www.cytoscape.org/).

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