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Gene set enrichment analysis report handling for graphing in Cytoscape IGOR.7.00.x-1.0

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Download: GSEA2Cytoscape.zip
Size: 13.26 KB
md5_file hash: e2b0cb748814932cd7f5530c3c1e2618
First released: July 18, 2017 - 07:06

The .zip file contains an Igor procedur file (.ipf) and a word processor file (.rtf) showing an example run.

Gene set enrichment analysis report handling for graphing in Cytoscape

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This project handles gene set enrichment analysis (GSEA) output from the Broad Institute resource (http://software.broadinstitute.org/gsea/index.jsp) comparing enrichments between two groups and providing output to be graphed in Cytoscape (http://www.cytoscape.org/).

MatrixFileReader XOP IGOR.6.20.x-0.25-.2

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Download: matrixFileReaderXOP-v0.25.2.zip
Size: 3.01 MB
md5_file hash: 917bee71722c455e3c24fe9a38534f46
First released: July 4, 2017 - 12:35
  • Fix encoding of metadata/text waves for IP7. These now hold unicode encoded text for IP7 and the local ANSI codepage encoded text for IP6. Text waves loaded with an old version of this XOP can be fixed with setting the encoding of text waves to the local ANSI codepage. For example on this authors computer the line SetWaveTextEncoding 3, 16, metadata_00002 fixes the issue.
  • Upgrade to XOP Toolkit 7.01

miniAna IGOR.6.30.x-1.0-1

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Download: miniAna-v1.0.1.zip
Size: 451.84 KB
md5_file hash: 6f6edd2022f4101ef1292ae9cf41e01e
First released: July 2, 2017 - 12:02
Last updated: July 2, 2017 - 12:02

Changes on default settings.

iPhys IGOR.6.30.x-2.02

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Download: iPhys 2.01.zip
Size: 2.45 MB
md5_file hash: 7f50d970890527f26a3609cd07dbaa9c
First released: June 30, 2017 - 06:27

Fixed slow acquisition speed on some systems

iPhys IGOR.6.20.x-2.01- for Igor 6.2

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Download: iPhys 2_0.zip
Size: 3.74 MB
md5_file hash: 9d65da199f9d9d8ea091345e1db1a00f
First released: June 28, 2017 - 06:23
Last updated: June 28, 2017 - 06:23

same as Igor 6.3

iPhys IGOR.6.30.x-2.01

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Download: iPhys 2.zip
Size: 3.74 MB
md5_file hash: 9d65da199f9d9d8ea091345e1db1a00f
First released: June 28, 2017 - 06:22
Last updated: June 28, 2017 - 06:22

Completely redesigned and much faster analysis of electrophysiological and imaging data. New module for versatile electrical stimuli generation with an immediate preview option. New analusis of action potentials, including dVm vs Vm plot, semi-automatic detection of spikes and spike subtraction to reveal subthreshold voltage. Histogram and ROC/accuracy tests to measure difference between different recorded signals. New, fast computation of ROIs from a large stack of images. Frame-by-frame preview of imaging data, 'line scan' mode from frame scans.

iPhys IGOR.6.30.x-2-manual

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Download: iPhys Manual v2.zip
Size: 2.16 MB
md5_file hash: f06c3818b0a32b1928431058b947419a
First released: June 28, 2017 - 06:11

Manual for iPhys2

tClamp16 IGOR.6.30.x-0.0-alpha

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Download: tClamp16-v0.0.0-alpha.zip
Size: 27.65 KB
md5_file hash: 74594117e651b1457fd7a0431e0925d0
First released: June 14, 2017 - 10:48

Pre-release.

tClamp16

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tClamp16

Igor Pro GUI which offers a data acquisition environment with InstruTECH ITC16.

Getting Started

Prerequisites

* Igor Pro 6.1 or later
* InstruTECH ITC-16 and a host interface
* ITC legacy XOP (ITC_X86_V##.XOP, ITC_X86_V## Help.ihf)

Installing

Similar to that of tClamp18 (https://github.com/yuichi-takeuchi/tClamp18).

Work flow

Similar to that of tClamp18 (https://github.com/yuichi-takeuchi/tClamp18).

Help

* Click "Help" in tClamp16 menu.

Versioning

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