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Baseline Fitting IGOR.7.00.x-3.0

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Download: Baselines_0.ipf
Size: 29.75 KB
md5_file hash: 8847d52e13a34a541ae40851c94389d7
First released: September 14, 2017 - 09:28

Uses a new control panel interface. Baseline is updated in response to controls. Added some extra fitting functions. New option to attempt to fit a tangent between two curved regions of spectrum.

Encircle IGOR.7.00.x-1.0

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Download: Encircle.ipf
Size: 9.34 KB
md5_file hash: bf386fb89d698dda381f138fdf211474
First released: August 28, 2017 - 15:25
Last updated: August 28, 2017 - 15:25

First release, feedback appreciated!

Encircle

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encircle.png

Encircle a cloud of data on a plot and shade the bounded region.

How to use:

  • Right click on a data point to invoke the trace menu and select "Encircle points" to draw a polygon that surrounds all of the data in the wave.
  • If you change the aspect ratio of the plot area you can repeat this procedure to update the shape of the polygon that surrounds the data.
  • Selecting "Remove Encircled Region" deletes the shaded region.

Polygons are drawn in the user back layer using axis coordinates and can be edited with the drawing tools.

Semi-Automated Routines for Functional Image Analysis (SARFIA) IGOR.7.00.x-1.09-A

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Download: SARFIA_1_09_0.zip
Size: 6.04 MB
md5_file hash: dda2cc4007fbd5b49b1a005ab2e9f43f
First released: August 21, 2017 - 06:02
Last updated: August 21, 2017 - 06:01

Requires Igor Pro 7 or later.
For Igor 6.3 compatibility download SARFIA version 1.07.

This release contains a detailed help file, describing all functions and a manual describing the control panels. To install, unzip and copy the contents of User Procedures into the WaveMetrics>User Procedures folder, the contents of Igor Procedures into the WaveMetrics>Igor Procedures folder and the contents of Help Files into the WaveMetrics>Igor Help Files.

Changelog:
1.09: Multithreaded "RemoveROI" to speed up removal of small (or large) ROIs; Minor improvements.

Semi-Automated Routines for Functional Image Analysis (SARFIA) IGOR.7.00.x-1.09

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Download: SARFIA_1_09.zip
Size: 116.88 KB
md5_file hash: c617330e83e25fa2882d6d6c0093aff6
First released: August 21, 2017 - 05:54

***The zip file doesn't contain all necessary files. Download release 1.09A***

Gene set enrichment analysis report handling for graphing in Cytoscape IGOR.7.00.x-1.0

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Download: GSEA2Cytoscape.zip
Size: 13.26 KB
md5_file hash: e2b0cb748814932cd7f5530c3c1e2618
First released: July 18, 2017 - 07:06

The .zip file contains an Igor procedur file (.ipf) and a word processor file (.rtf) showing an example run.

Gene set enrichment analysis report handling for graphing in Cytoscape

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This project handles gene set enrichment analysis (GSEA) output from the Broad Institute resource (http://software.broadinstitute.org/gsea/index.jsp) comparing enrichments between two groups and providing output to be graphed in Cytoscape (http://www.cytoscape.org/).

Quick ROI inspector IGOR.6.20.x-1.0

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Download: QuickRoi.ipf
Size: 3.89 KB
md5_file hash: 50aac9740b1d7afa0c9da58b3937d332
First released: June 6, 2017 - 07:40

////////////////////QUICK ROI TOOL////////////////////////////////
////Use the marquee tool to mark an ROI, right click and select quickroi.
////This is then appended to the image with its coordinates printed to the history.
////The average of the pixel values within the ROI in each frame is calculated and
//// shown in the wave QROI. If you select a new ROI this everything is updated.
/// You can also use the "subtract background" button to subtract the average of the
////ROI pixels from the whole image on a frame by frmae basis. Useful for analysing Ca imaging movies

Quick ROI inspector

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//// This marquee tool is for analysing time series movies.
////Use the marquee tool to mark an ROI, right click and select quickroi.
////This is then appended to the image with its coordinates printed to the history.
////The average of the pixel values within the ROI in each frame is calculated and
//// shown in the wave QROI. If you select a new ROI this everything is updated.
/// You can also use the "subtract background" button to subtract the average of the
////ROI pixels from the whole image on a frame by frmae basis. Useful for analysing Ca imaging movies

Semi-Automated Routines for Functional Image Analysis (SARFIA) IGOR.7.00.x-1.08

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Download: SARFIA1_08.zip
Size: 6.04 MB
md5_file hash: ed5e09e22496a6acebdda171d0eb9275
First released: May 24, 2017 - 12:46

Requires Igor Pro 7 or later.
For Igor 6.3 compatibility download SARFIA version 1.07.

This release contains a detailed help file, describing all functions and a manual describing the control panels. To install, unzip and copy the contents of User Procedures into the WaveMetrics>User Procedures folder, the contents of Igor Procedures into the WaveMetrics>Igor Procedures folder and the contents of Help Files into the WaveMetrics>Igor Help Files.

Changelog:

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