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Gene set enrichment analysis report handling for graphing in Cytoscape IGOR.7.00.x-1.0

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Download: GSEA2Cytoscape.zip
Size: 13.26 KB
md5_file hash: e2b0cb748814932cd7f5530c3c1e2618
First released: July 18, 2017 - 07:06

The .zip file contains an Igor procedur file (.ipf) and a word processor file (.rtf) showing an example run.

Gene set enrichment analysis report handling for graphing in Cytoscape

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This project handles gene set enrichment analysis (GSEA) output from the Broad Institute resource (http://software.broadinstitute.org/gsea/index.jsp) comparing enrichments between two groups and providing output to be graphed in Cytoscape (http://www.cytoscape.org/).

Quick ROI inspector IGOR.6.20.x-1.0

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Download: QuickRoi.ipf
Size: 3.89 KB
md5_file hash: 50aac9740b1d7afa0c9da58b3937d332
First released: June 6, 2017 - 07:40

////////////////////QUICK ROI TOOL////////////////////////////////
////Use the marquee tool to mark an ROI, right click and select quickroi.
////This is then appended to the image with its coordinates printed to the history.
////The average of the pixel values within the ROI in each frame is calculated and
//// shown in the wave QROI. If you select a new ROI this everything is updated.
/// You can also use the "subtract background" button to subtract the average of the
////ROI pixels from the whole image on a frame by frmae basis. Useful for analysing Ca imaging movies

Quick ROI inspector

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//// This marquee tool is for analysing time series movies.
////Use the marquee tool to mark an ROI, right click and select quickroi.
////This is then appended to the image with its coordinates printed to the history.
////The average of the pixel values within the ROI in each frame is calculated and
//// shown in the wave QROI. If you select a new ROI this everything is updated.
/// You can also use the "subtract background" button to subtract the average of the
////ROI pixels from the whole image on a frame by frmae basis. Useful for analysing Ca imaging movies

Semi-Automated Routines for Functional Image Analysis (SARFIA) IGOR.7.00.x-1.08

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Download: SARFIA1_08.zip
Size: 6.04 MB
md5_file hash: ed5e09e22496a6acebdda171d0eb9275
First released: May 24, 2017 - 12:46

Requires Igor Pro 7 or later.
For Igor 6.3 compatibility download SARFIA version 1.07.

This release contains a detailed help file, describing all functions and a manual describing the control panels. To install, unzip and copy the contents of User Procedures into the WaveMetrics>User Procedures folder, the contents of Igor Procedures into the WaveMetrics>Igor Procedures folder and the contents of Help Files into the WaveMetrics>Igor Help Files.

Changelog:

Arc Hull Baseline IGOR.7.00.x-1.2

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Download: ArcHull_0.ipf
Size: 11.85 KB
md5_file hash: b25dba25a60a3a528cf43b2579b3f274
First released: May 9, 2017 - 10:31
Last updated: May 9, 2017 - 10:30

Update provides a smoothing option that allows baseline to pass though, rather than under, noise.
See procedure file for instructions.

XOP function stub generator IGOR.6.00.x-0.15

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Download: xop-stub-generator-0.15.zip
Size: 6.88 KB
md5_file hash: 02ad3af8c416c07ece16042191f0f25a
First released: April 7, 2017 - 05:10
Last updated: April 7, 2017 - 05:09

Relicense script under 3-clause BSD.

Unit Testing Framework IGOR.6.00.x-1.06

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Download: UnitTestingFramework-v1.06.zip
Size: 234.21 KB
md5_file hash: 2abc715324b76739bdeed417adb05073
First released: March 23, 2017 - 17:16
  • Fix missing license issue

The unit testing framework is now licensed under 3-Clause BSD. All contributors agreed to this license.

EccentricXPS - Analysis and Organisation of XPS Spectra IGOR.6.30.x-1.101

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Download: EccentricXPS_v_1.101x.zip
Size: 162.26 KB
md5_file hash: 62e4cf8f733d9df6c8bb98d0cfec378c
First released: March 8, 2017 - 02:36

Contains the procedure and help files. The functionality has not changed substantially from the earlier version, but several bugs have been fixed. The experiment file with a collection of spectra to test the procedure on has not changed and is not included. To download it, please download the earlier release which includes the experiment file.

To use the new procedure with an old experiment file, please close all windows created by the old procedure and recreate them with the new procedure before clicking any buttons in the windows.

GenCurvefit IGOR.7.00.x-7.0-0

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Download: gencurvefit_0.zip
Size: 405.3 KB
md5_file hash: afbbfb191b40e1f5fe4077a23aba16a7
First released: March 6, 2017 - 16:03
Last updated: March 6, 2017 - 16:03

For IP7 only

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