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PHI SPE File Loader IGOR.6.30.x-1.0

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Download: PHI SPE File Loader_0.zip
Size: 2.16 KB
md5_file hash: 99047e043837c7832351ef6b3996bee6
First released: November 25, 2016 - 10:09

This is a full release. The acqtime label is now called dwelltime.

Unit Testing Framework IGOR.6.30.x-1.05

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Download: UnitTestingFramework-v1.05.zip
Size: 210.18 KB
md5_file hash: fd041dc347b953b026c272d258c05366
First released: November 17, 2016 - 14:17

Add wrapper functions for text waves

  • One can write like CHECK_EQUAL_TEXTS( somefunction(), {"a","b","c"} ). In old version, CHECK_EQUAL_WAVES( somefunction(), {"a","b","c"} ) makes compile error.

Fix and extend the wave type constants

  • INT16_WAVE is 0x10 and not 0x16. Add also INT64_WAVE, DATAFOLDER_WAVE and WAVE_WAVE.

Add *_PROPER_STR

Doxygen filter for procedure files IGOR.6.00.x-0.26

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Download: doxIPFFilter-v0.26.zip
Size: 122.26 KB
md5_file hash: e82a5075ea6d945182aa05d907fc9516
First released: November 17, 2016 - 13:48

Doxyfile: Adapt FILTER_PATTERNS for latest doxygen version

doxygen-filter-ipf: Make output sphinx compatible

  • Change wave type flag to something more C++-ish
  • Remove struct keyword inside structs when referencing other structs
  • Use lower case for static keyword
  • Convert threadsafe function specification into a valid C++11 attribute
  • Remove "menus=0" after an include statement

Avoid third argument of match

Arc Hull Baseline IGOR.7.00.x-1.0

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Download: ArcHull.ipf
Size: 8.69 KB
md5_file hash: c6c9b52d948786a3eb5a959d1d51e696
First released: November 1, 2016 - 15:57

Includes Igor 7 code, but can be easily adapted for Igor 6.x

Arc Hull Baseline

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archull.png

This package adds a collection of algorithmically-defined baselines for spectral data. It's named for the arc hull type baseline, in which a circular arc with adjustable depth is added to the spectrum (ie., the spectrum is bent), and the lower portion of a convex hull is calculated for the resultant spectrum. The baseline consists of the sum of the arc and the convex hull.

How to use the Arc Hull package

PHI SPE File Loader IGOR.6.30.x-0.4-beta

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Download: PHI SPE File Loader.zip
Size: 2.16 KB
md5_file hash: da22eb23e6007a522091179f39b725dd
First released: September 27, 2016 - 13:18

Changes

This version is now just a procedure file. Install it and invoke it using standard practices either in the User Procedures folder or the Igor Procedures folder.

This version no longer uses split string to parse the spectrum lines. It reads the line as a text wave and stores the elements.

All function calls are STATIC except the call to LoadPHISPEFile(). This is to allow an eventual change to an independent module and to avoid name-space conflicts in other functions.

Updates

The file is loaded in to a folder that is named by the file name.

TEA_MT - Intensity versus time trace of fluorescent spots extraction and analysis software IGOR.6.30.x-1

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Download: TEA_MT.zip
Size: 9.92 MB
md5_file hash: 530c1a5d407b461022f437f2d47a44dd
First released: September 22, 2016 - 01:26
Last updated: September 22, 2016 - 01:26

The attached zip file contains all necessary info.

TEA_MT - Intensity versus time trace of fluorescent spots extraction and analysis software

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GUI of TEA_MT updated

The software was written so that all of the daily single-molecule (and other fluorescent spots) data analysis tasks are accessible at one place:
1. fluorescent spot detection,
2. co-localization of the fluorescent spots from 2 channels,
3. intensity versus time traces extraction for selected type of fluorescent spots,
4. filtering of traces
5. normalization of traces to an excitation field
6. intensity change point detection in the traces,
7. characterization of detected states,
8. manual selection of extracted traces,
9. 2D histogram plotting of the analysis results.

GIS_shapefile_and_GeoTIFF_file_load IGOR.6.30.x-1.0

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Download: GIS shapefile and GeoTIFF load.pxp
Size: 184.58 KB
md5_file hash: 3943fb96468aeed524d99f05d258d87a
First released: September 14, 2016 - 14:34

Load shapefiles and GeoTIFF files into Igor. If the datum of loaded data is eastings and northings or false eastings and false northings, convert it to decimal lat/lon. This works for GeoTIFF images also.

There is also a macro to write shapefiles.

This experiment requires that the IgorGIS.xop is installed. (Available from Wavemetrics)

GIS shapefile and GeoTIFF file load

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Load shapefiles and GeoTIFF files into Igor. If the datum of loaded data is eastings and northings or false eastings and false northings, convert it to decimal lat/lon. This works for GeoTIFF images also.

There is also a macro to write shapefiles.

This experiment requires that the IgorGIS.xop is installed. (Available from Wavemetrics)

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