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Arc Hull Baseline IGOR.7.00.x-1.0

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Download: ArcHull.ipf
Size: 8.69 KB
md5_file hash: c6c9b52d948786a3eb5a959d1d51e696
First released: November 1, 2016 - 15:57

Includes Igor 7 code, but can be easily adapted for Igor 6.x

Arc Hull Baseline

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archull.png

This package adds a collection of algorithmically-defined baselines for spectral data. It's named for the arc hull type baseline, in which a circular arc with adjustable depth is added to the spectrum (ie., the spectrum is bent), and the lower portion of a convex hull is calculated for the resultant spectrum. The baseline consists of the sum of the arc and the convex hull.

How to use the Arc Hull package

PHI SPE File Loader IGOR.6.30.x-0.4-beta

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Download: PHI SPE File Loader.zip
Size: 2.16 KB
md5_file hash: da22eb23e6007a522091179f39b725dd
First released: September 27, 2016 - 13:18

Changes

This version is now just a procedure file. Install it and invoke it using standard practices either in the User Procedures folder or the Igor Procedures folder.

This version no longer uses split string to parse the spectrum lines. It reads the line as a text wave and stores the elements.

All function calls are STATIC except the call to LoadPHISPEFile(). This is to allow an eventual change to an independent module and to avoid name-space conflicts in other functions.

Updates

The file is loaded in to a folder that is named by the file name.

TEA_MT - Intensity versus time trace of fluorescent spots extraction and analysis software IGOR.6.30.x-1

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Download: TEA_MT.zip
Size: 9.92 MB
md5_file hash: 530c1a5d407b461022f437f2d47a44dd
First released: September 22, 2016 - 01:26
Last updated: September 22, 2016 - 01:26

The attached zip file contains all necessary info.

TEA_MT - Intensity versus time trace of fluorescent spots extraction and analysis software

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GUI of TEA_MT updated

The software was written so that all of the daily single-molecule (and other fluorescent spots) data analysis tasks are accessible at one place:
1. fluorescent spot detection,
2. co-localization of the fluorescent spots from 2 channels,
3. intensity versus time traces extraction for selected type of fluorescent spots,
4. filtering of traces
5. normalization of traces to an excitation field
6. intensity change point detection in the traces,
7. characterization of detected states,
8. manual selection of extracted traces,
9. 2D histogram plotting of the analysis results.

GIS_shapefile_and_GeoTIFF_file_load IGOR.6.30.x-1.0

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Download: GIS shapefile and GeoTIFF load.pxp
Size: 184.58 KB
md5_file hash: 3943fb96468aeed524d99f05d258d87a
First released: September 14, 2016 - 14:34

Load shapefiles and GeoTIFF files into Igor. If the datum of loaded data is eastings and northings or false eastings and false northings, convert it to decimal lat/lon. This works for GeoTIFF images also.

There is also a macro to write shapefiles.

This experiment requires that the IgorGIS.xop is installed. (Available from Wavemetrics)

GIS shapefile and GeoTIFF file load

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Load shapefiles and GeoTIFF files into Igor. If the datum of loaded data is eastings and northings or false eastings and false northings, convert it to decimal lat/lon. This works for GeoTIFF images also.

There is also a macro to write shapefiles.

This experiment requires that the IgorGIS.xop is installed. (Available from Wavemetrics)

PHI SPE File Loader IGOR.6.30.x-0.3-beta

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Download: PHISPELoader03.zip
Size: 22.08 KB
md5_file hash: c9793cd2a043959b752cd6dd50d1e17b
First released: September 5, 2016 - 06:20
Last updated: September 5, 2016 - 06:20

This no longer uses a Packages folder. It loads everything directly to the current folder.

This loads the spectra.

PHI SPE File Loader IGOR.6.30.x-0.2-beta

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Downloaded 14 times
Download: PHISPELoader02.zip
Size: 21.57 KB
md5_file hash: 534f41f934a52c1a24ab03d585116d8e
First released: September 3, 2016 - 09:13

This version creates a package folder and also loads the binary headers.

PHI SPE File Loader IGOR.6.30.x-0.1-beta

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Download: PHISPELoader01.zip
Size: 21.13 KB
md5_file hash: 9a0de757bb17c35fc7d221ec93dff556
First released: September 3, 2016 - 06:25
Last updated: September 3, 2016 - 06:25

This is the first beta release. It only loads the text header. Download this only to see the beginning concept. This is NOT a working version of a full file loader.

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