Releases for Semi-Automated Routines for Functional Image Analysis (SARFIA)

Semi-Automated Routines for Functional Image Analysis (SARFIA) IGOR.7.00.x-1.09-A

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Downloaded 43 times
Download: SARFIA_1_09_0.zip
Size: 6.04 MB
md5_file hash: dda2cc4007fbd5b49b1a005ab2e9f43f
First released: August 21, 2017 - 06:02
Last updated: August 21, 2017 - 06:01

Requires Igor Pro 7 or later.
For Igor 6.3 compatibility download SARFIA version 1.07.

This release contains a detailed help file, describing all functions and a manual describing the control panels. To install, unzip and copy the contents of User Procedures into the WaveMetrics>User Procedures folder, the contents of Igor Procedures into the WaveMetrics>Igor Procedures folder and the contents of Help Files into the WaveMetrics>Igor Help Files.

Changelog:
1.09: Multithreaded "RemoveROI" to speed up removal of small (or large) ROIs; Minor improvements.
1.08: Requires Igor Pro 7 or newer. Resolved an error with Igor Pro 7.04. Improved center of mass calculations when drawn ROI size is larger than the actual image feature. Added Center of mass for time series. Added ROIstats for time series and for 3D time series. 2D distance transform now uses faster WaveMetrics code (new feature in ImageTransform);
1.07: Added loader for .ome.tiff and .lsm files. Fixed a bug when >256 traces were isolated, #256 was identical to #0, #257 to #1, etc. Resolved a conflict with Neuromatic. Many minor bugfixes.
1.05: Added new function DistanceTransform to calculate the distance transform of a binary image. Added function PopCorrelate to calculate the normalized cross-covariance of traces in a a populationwave. Added function DrawCoMPositions to label the relative positions of centers of mass (rather than their number). Repaired functions to measure the relative positions in a structure ("IPLPosition"). Sped up function MultiROIStats. Image stacks with 3 layers will now be displayed as a grayscale stack rather than a RGB image. Improved automatic parameters for stack registration (added flag /PSTK when calling ImageRegistration). Updated manual and help file with new and missing functions.
1.04: Many minor updates. Updated manual and help files. Added support for the latest ScanImage versions (3.6). Added a method to analyse overlays (see help file).
1.03: Added thresholding based on the à trous wavelet transform and extraction of the timecourse of all pixels in a binary or MultiROI ROI mask. Added version information ("About") in the menu. Updated help files.
1.02A: Removed unnecessary includes from CustomStart.ipf, added a missing procedure file (Difference.ipf).
1.02: Fixed a bug in the LoadMovie operation that would not load images with a single frame.
1.01: Added Manual; Minor bugfixes.

Semi-Automated Routines for Functional Image Analysis (SARFIA) IGOR.7.00.x-1.09

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Downloaded 8 times
Download: SARFIA_1_09.zip
Size: 116.88 KB
md5_file hash: c617330e83e25fa2882d6d6c0093aff6
First released: August 21, 2017 - 05:54

***The zip file doesn't contain all necessary files. Download release 1.09A***

Semi-Automated Routines for Functional Image Analysis (SARFIA) IGOR.7.00.x-1.08

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Downloaded 39 times
Download: SARFIA1_08.zip
Size: 6.04 MB
md5_file hash: ed5e09e22496a6acebdda171d0eb9275
First released: May 24, 2017 - 12:46

Requires Igor Pro 7 or later.
For Igor 6.3 compatibility download SARFIA version 1.07.

This release contains a detailed help file, describing all functions and a manual describing the control panels. To install, unzip and copy the contents of User Procedures into the WaveMetrics>User Procedures folder, the contents of Igor Procedures into the WaveMetrics>Igor Procedures folder and the contents of Help Files into the WaveMetrics>Igor Help Files.

Changelog:
1.08: Requires Igor Pro 7 or newer. Resolved an error with Igor Pro 7.04. Improved center of mass calculations when drawn ROI size is larger than the actual image feature. Added Center of mass for time series. Added ROIstats for time series and for 3D time series. 2D distance transform now uses faster WaveMetrics code (new feature in ImageTransform);
1.07: Added loader for .ome.tiff and .lsm files. Fixed a bug when >256 traces were isolated, #256 was identical to #0, #257 to #1, etc. Resolved a conflict with Neuromatic. Many minor bugfixes.
1.05: Added new function DistanceTransform to calculate the distance transform of a binary image. Added function PopCorrelate to calculate the normalized cross-covariance of traces in a a populationwave. Added function DrawCoMPositions to label the relative positions of centers of mass (rather than their number). Repaired functions to measure the relative positions in a structure ("IPLPosition"). Sped up function MultiROIStats. Image stacks with 3 layers will now be displayed as a grayscale stack rather than a RGB image. Improved automatic parameters for stack registration (added flag /PSTK when calling ImageRegistration). Updated manual and help file with new and missing functions.
1.04: Many minor updates. Updated manual and help files. Added support for the latest ScanImage versions (3.6). Added a method to analyse overlays (see help file).
1.03: Added thresholding based on the à trous wavelet transform and extraction of the timecourse of all pixels in a binary or MultiROI ROI mask. Added version information ("About") in the menu. Updated help files.
1.02A: Removed unnecessary includes from CustomStart.ipf, added a missing procedure file (Difference.ipf).
1.02: Fixed a bug in the LoadMovie operation that would not load images with a single frame.
1.01: Added Manual; Minor bugfixes.

Semi-Automated Routines for Functional Image Analysis (SARFIA) IGOR.6.30.x-1.07

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Downloaded 345 times
Download: SARFIA1_07.zip
Size: 6.05 MB
md5_file hash: d54943375d7697fa08483be62793be5a
First released: January 11, 2016 - 06:03

Runs on Igor Pro 6.3 or later.
Compatible with Igor Pro 7.

This release contains a detailed help file, describing all functions and a manual describing the control panels. To install, unzip and copy the contents of User Procedures into the WaveMetrics>User Procedures folder, the contents of Igor Procedures into the WaveMetrics>Igor Procedures folder and the contents of Help Files into the WaveMetrics>Igor Help Files.

Changelog:
1.07: Added loader for .ome.tiff and .lsm files. Fixed a bug when >256 traces were isolated, #256 was identical to #0, #257 to #1, etc. Resolved a conflict with Neuromatic. Many minor bugfixes.
1.05: Added new function DistanceTransform to calculate the distance transform of a binary image. Added function PopCorrelate to calculate the normalized cross-covariance of traces in a a populationwave. Added function DrawCoMPositions to label the relative positions of centers of mass (rather than their number). Repaired functions to measure the relative positions in a structure ("IPLPosition"). Sped up function MultiROIStats. Image stacks with 3 layers will now be displayed as a grayscale stack rather than a RGB image. Improved automatic parameters for stack registration (added flag /PSTK when calling ImageRegistration). Updated manual and help file with new and missing functions.
1.04: Many minor updates. Updated manual and help files. Added support for the latest ScanImage versions (3.6). Added a method to analyse overlays (see help file).
1.03: Added thresholding based on the à trous wavelet transform and extraction of the timecourse of all pixels in a binary or MultiROI ROI mask. Added version information ("About") in the menu. Updated help files.
1.02A: Removed unnecessary includes from CustomStart.ipf, added a missing procedure file (Difference.ipf).
1.02: Fixed a bug in the LoadMovie operation that would not load images with a single frame.
1.01: Added Manual; Minor bugfixes.

Semi-Automated Routines for Functional Image Analysis (SARFIA) IGOR.6.12.x-1.05

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Downloaded 1178 times
Download: SARFIA1_05.zip
Size: 6.04 MB
md5_file hash: d4d5ec12227838c8153ca5450c1f35ea
First released: December 30, 2010 - 06:36

Runs on Igor Pro 6.12 or later.

This release contains a detailed help file, describing all functions and a manual describing the control panels. To install, unzip and copy the contents of User Procedures into the WaveMetrics>User Procedures folder, the contents of Igor Procedures into the WaveMetrics>Igor Procedures folder and the contents of Help Files into the WaveMetrics>Igor Help Files.

Changelog:
1.05: Added new function DistanceTransform to calculate the distance transform of a binary image. Added function PopCorrelate to calculate the normalized cross-covariance of traces in a a populationwave. Added function DrawCoMPositions to label the relative positions of centers of mass (rather than their number). Repaired functions to measure the relative positions in a structure ("IPLPosition"). Sped up function MultiROIStats. Image stacks with 3 layers will now be displayed as a grayscale stack rather than a RGB image. Improved automatic parameters for stack registration (added flag /PSTK when calling ImageRegistration). Updated manual and help file with new and missing functions.
1.04: Many minor updates. Updated manual and help files. Added support for the latest ScanImage versions (3.6). Added a method to analyse overlays (see help file).
1.03: Added thresholding based on the à trous wavelet transform and extraction of the timecourse of all pixels in a binary or MultiROI ROI mask. Added version information ("About") in the menu. Updated help files.
1.02A: Removed unnecessary includes from CustomStart.ipf, added a missing procedure file (Difference.ipf).
1.02: Fixed a bug in the LoadMovie operation that would not load images with a single frame.
1.01: Added Manual; Minor bugfixes.

Semi-Automated Routines for Functional Image Analysis (SARFIA) IGOR.6.12.x-1.04

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Downloaded 224 times
Download: SARFIA1_04.zip
Size: 4.9 MB
md5_file hash: 59130b2931bf0a5c2277b16f686a9869
First released: August 24, 2010 - 08:46
Last updated: August 24, 2010 - 08:46

Runs on Igor Pro 6.12 or later.

This release contains a detailed help file, describing all functions and a manual describing the control panels. To install, unzip and copy the contents of User Procedures into the WaveMetrics>User Procedures folder, the contents of Igor Procedures into the WaveMetrics>Igor Procedures folder and the contents of Help Files into the WaveMetrics>Igor Help Files.

Changelog:
1.04: Many minor updates. Updated manual and help files. Added support for the latest ScanImage versions (3.6). Added a method to analyse overlays (see help file).
1.03: Added thresholding based on the à trous wavelet transform and extraction of the timecourse of all pixels in a binary or MultiROI ROI mask. Added version information ("About") in the menu. Updated help files.
1.02A: Removed unnecessary includes from CustomStart.ipf, added a missing procedure file (Difference.ipf).
1.02: Fixed a bug in the LoadMovie operation that would not load images with a single frame.
1.01: Added Manual; Minor bugfixes.

Semi-Automated Routines for Functional Image Analysis (SARFIA) IGOR.6.10.x-1.03

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Downloaded 258 times
Download: SARFIA1_03.zip
Size: 4.82 MB
md5_file hash: e315d8e75834ce7b899cf94c8a214b8a
First released: January 27, 2010 - 10:00
Last updated: January 27, 2010 - 10:00

Runs on Igor Pro 6.12 or later.

This release contains a detailed help file, describing all functions and a manual describing the control panels. To install, unzip and copy the contents of User Procedures into the WaveMetrics>User Procedures folder, and the contents of Igor Procedures into the WaveMetrics>Igor Procedures folder.

Changelog:
1.03: Added thresholding based on the à trous wavelet transform and extraction of the timecourse of all pixels in a binary or MultiROI ROI mask. Added version information ("About") in the menu. Updated help files.
1.02A: Removed unnecessary includes from CustomStart.ipf, added a missing procedure file (Difference.ipf).
1.02: Fixed a bug in the LoadMovie operation that would not load images with a single frame.
1.01: Added Manual; Minor bugfixes.

Semi-Automated Routines for Functional Image Analysis (SARFIA) IGOR.6.10.x-1.02-A

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Downloaded 144 times
Download: SARFIA1_02A.zip
Size: 3.98 MB
md5_file hash: ecbf4c1579c36ee6c96ab13b401fd7d3
First released: December 15, 2009 - 08:41

Runs on Igor Pro 6.12 or later.

This release contains a detailed help file, describing all functions and a manual describing the control panels. To install, unzip and copy the contents of User Procedures into the WaveMetrics>User Procedures folder, and the contents of Igor Procedures into the WaveMetrics>Igor Procedures folder.

Changelog:
1.02A: Removed unnecessary includes from CustomStart.ipf, added a missing procedure file (Difference.ipf).
1.02: Fixed a bug in the LoadMovie operation that would not load images with a single frame.
1.01: Added Manual; Minor bugfixes.

Semi-Automated Routines for Functional Image Analysis (SARFIA) IGOR.6.10.x-1.02

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Downloaded 114 times
Download: SARFIA1_02.zip
Size: 3.97 MB
md5_file hash: c69d2d069d269214a7451b974d0ec395
First released: December 14, 2009 - 09:32

Runs on Igor Pro 6.12 or later.

This release contains a detailed help file, describing all functions and a manual describing the control panels. To install, unzip and copy the contents of User Procedures into the WaveMetrics>User Procedures folder, and the contents of Igor Procedures into the WaveMetrics>Igor Procedures folder.

Changelog:
1.02: Fixed a bug in the LoadMovie operation that would not load images with a single frame.
1.01: Added Manual; Minor bugfixes.

Semi-Automated Routines for Functional Image Analysis (SARFIA) IGOR.6.10.x-1.01

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Downloaded 107 times
Download: SARFIA1_01.zip
Size: 3.97 MB
md5_file hash: 47c8f3e26d9a6ae07deb218bf867ab3a
First released: December 11, 2009 - 09:26
Last updated: December 11, 2009 - 09:26

Runs on Igor Pro 6.12 or later.

This release contains a detailed help file, describing all functions and a manual describing the control panels. To install, unzip and copy the contents of User Procedures into the WaveMetrics>User Procedures folder, and the contents of Igor Procedures into the WaveMetrics>Igor Procedures folder.

Minor bugfixes since version 1.0.

Semi-Automated Routines for Functional Image Analysis (SARFIA) IGOR.6.10.x-1.0-no manual

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Downloaded 105 times
Download: SARFIA_0.zip
Size: 1.01 MB
md5_file hash: 72e931b68715a71b340854eecc0e0d5a
First released: December 8, 2009 - 08:16
Last updated: December 8, 2009 - 08:16

Runs on Igor Pro 6.12 or later.

This release contains a detailed help file, describing all functions. However, a detailed manual describing all control panels is still being written. It will be included in the next release. To install, unzip and copy the contents of User Procedures into the WaveMetrics>User Procedures folder, and the contents of Igor Procedures into the WaveMetrics>Igor Procedures folder.

Semi-Automated Routines for Functional Image Analysis (SARFIA) IGOR.6.10.x-0.9

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Downloaded 175 times
Download: SARFIA.zip
Size: 193.17 KB
md5_file hash: abdbf88a2ad76caa4345721407bf8a47
First released: December 4, 2009 - 12:50

This release is functional, but contains many unnecessary procedure files. To install, unzip and copy the contents of User Procedures into the WaveMetrics>User Procedures folder, and the contents of Igor Procedures into the WaveMetrics>Igor Procedures folder

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